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October 16, 2019
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Favorable prognosis of NPM1 mutations in AML lost in patients with poor cytogenetic risk

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Patients with acute myeloid leukemia and adverse-risk cytogenetics had an unfavorable prognosis regardless of whether they harbored mutated or wild-type NPM1, according to results of a pooled analysis of patient data published in Journal of Clinical Oncology.

Perspective from Jonathan M. Gerber, MD

Thus, although NPM1 mutations typically have been associated with a favorable prognosis in AML, poor cytogenetic risk appeared to override this association.

“Mutations in the NPM1 gene have been associated with a favorable prognosis in the absence of concomitant internal tandem duplications (ITD) of the FLT3 gene in cytogenetically normal AML,” Linus Angenendt, MD, of the department of medicine at University Hospital Münster in Germany, and colleagues wrote. “It was later observed that patients with an NPM1 mutation and a low allelic ratio FLT3-ITD had similar outcomes to patients with an NPM1 mutation but no FLT3-ITD. Thus, both groups are now being classified as favorable risk in the 2017 update of the European LeukemiaNet (ELN 2017) recommendations on genetic risk classification.”

A change in the ELN 2017 guidelines also sought to consider patients with mutated NPM1 and negative or low allelic ratio (FLT3-ITDneg/low) as having favorable risk, regardless of coexisting chromosomal abnormalities. However, limited evidence exists to support this change and previous studies have not evaluated the co-occurrence of NPM1 mutations and adverse-risk karyotype abnormalities, such as such as deletions or monosomies of chromosomes 5 or 7, abnormalities of chromosome 17p, or complex or monosomal karyotypes.

“Even though the combination of an NPM1 mutation with these abnormalities is rare, the prognostic effect of adverse cytogenetics in [NPM1-mutated] AML has important implications for postremission treatment decisions, in particular, the current recommendation that patients who are [NPM1-mutant]/FLT3-ITDneg/low not receive allogeneic hematopoietic stem cell transplantation, given their presumed low risk [for] relapse might be altered if the adverse karyotype increased the risk,” the researchers wrote.

Thus, Angenendt and colleagues examined the validity of the guidelines’ assumption that prognosis was favorable regardless of coexisting chromosomal abnormalities by analyzing the association between karyotype and clinical outcomes among 2,426 intensively treated patients with NPM1-mutated, FLT3-ITDneg/low AML. The researchers collected patient data from registries of nine international AML study groups or treatment centers.

Among these patients, 2,000 (82.4%; median age, 56 years; 56.2% women) had a normal karyotype and 426 (17.6%) had an abnormal karyotype. Among those with an abnormal karyotype, 329 (median age, 56 years; 55% men) had intermediate-risk chromosomal abnormalities, 83 (median age, 62 years; 60.2% men) had adverse-risk chromosomal abnormalities and 14 had favorable core-binding factor cytogenetics.

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The researchers compared these patients with data from 1,845 patients (median age, 58 years; 54.6% men) with wild-type NPM1/FLT3-ITDneg/low AML and adverse-risk cytogenetics.

Median follow-up was 4.23 years (95% CI, 4.05-4.46).

Results showed the 83 patients with NPM1-mutated, FLT3-ITDneg/low AML and adverse cytogenetics had lower complete remission rates (66.3%) than those with a normal karyotype (87.7%) or intermediate-risk cytogenetic abnormalities (86%; P < .001), as well as inferior 5-year OS (19.5% vs. 52.4% vs. 44.8%; P < .001), inferior 5-year EFS (18.1% vs. 40.6% vs. 36%; P < .001), and higher 5-year cumulative incidence of relapse (51.9% vs. 43.6% vs. 44.2%; P = .0012).

The associations remained significant (P < .001) in multivariable mixed-effects regression analyses adjusted for known clinicopathologic risk factors.

However, patients with NPM1-mutated, FLT3-ITDneg/low AML and adverse cytogenetics had similar outcomes as patients with wild-type NPM1, FLT3-ITDneg/low AML with regard to risk for death, experiencing an event and risk for relapse.

“This international collaborative study clearly shows that cytogenetic abnormalities are important determinants of outcome in [NPM1-mutated], FLT3-ITDneg/low AML,” Angenendt and colleagues wrote. “Most importantly, patients with NPM1 mutations with the FLT3-ITDneg/low genotype and adverse-risk cytogenetics share the same unfavorable prognosis as their counterparts with [wild-type] NPM1 and should be classified accordingly.” – by John DeRosier

Disclosures: Angenendt reports no relevant financial disclosures. Please see the study for all other authors’ relevant financial disclosures.